LDhat

LDhat has moved to GitHub!

convert: Simple manipulation of DNA sequence data
pairwise: Parametric and nonparametric analyses of recombination
interval: Estimation of variable recombination rates
rhomap: Estimation of variable recombination rates in the presence of hotspots
fin: Simulation of genetic variation data in LDhat format

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Older versions of LDhat

Nearly all functionality of the earlier versions of LDhat are maintained in the most recent GitHub version. Older versions of the software can be found on the old SourceForge project page, or on the archived web-sites.